format_mQTL: Routine to reformat the data of animal crosses into the...

In lhedjazi/mQTL.NMR: Metabolomic Quantitative Trait Locus Mapping for 1H NMR data

Description

This function enables to reformat data into the proper format. The user should provides in input metabolomic file, Genotype file and a file containing sex and pgm (parental grandmother).

Usage

format_mQTL(datafile, genofile, physdat, outdat, outgeno)

Arguments

datafile	metabolomic data file in text format
genofile	genotype data file in text format
physdat	a file containing sex and pgm in text format
outdat	Output data file with formatted phenotype data (metabolomic data + sex + pgm) in the format csvs
outgeno	Output data file with formatted genotype data in the csvs format

Value

formatted phenotype and genotype data files (in format csvs) are written to the user working directory (it is therefore preferable that the user create a new directory to be used throughout the study)

Author(s)

Lyamine Hedjazi

See Also

align_mQTL,

Examples

# Download data files
load_datafiles()

# Format data

format_mQTL(phenofile,genofile,physiodat,cleandat,cleangen)

lhedjazi/mQTL.NMR documentation built on May 31, 2019, 10:47 p.m.