logFC: Extract the individual fold changes statistics for elements...

Description Usage Arguments Value Examples

View source: R/MultiGSEAResult-methods.R

Description

Extract the individual fold changes statistics for elements in the expression object.

Usage

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logFC(x, as.dt = FALSE)

Arguments

x

A MultiGSEAResult()

as.dt

If FALSE (default), the data.frame like thing that this funciton returns will be set to a data.frame. Set this to TRUE to keep this object as a data.table

Value

The log fold change 'data.tableā€œ

Examples

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vm <- exampleExpressionSet(do.voom=TRUE)
gdb <- exampleGeneSetDb()
mg <- multiGSEA(gdb, vm, vm$design, 'tumor', methods=NULL)
lfc <- logFC(mg)

lianos/multiGSEA documentation built on Nov. 17, 2020, 1:26 p.m.