logFC: Extract the individual fold changes statistics for elements...

In lianos/multiGSEA: A unified interface to a plethora of gene set enrichment analysis methods

Description

Extract the individual fold changes statistics for elements in the expression object.

Usage

logFC(x, as.dt = FALSE)

Arguments

x	A MultiGSEAResult()
as.dt	If FALSE (default), the data.frame like thing that this funciton returns will be set to a data.frame. Set this to TRUE to keep this object as a data.table

Value

The log fold change 'data.table“

Examples

vm <- exampleExpressionSet(do.voom=TRUE)
gdb <- exampleGeneSetDb()
mg <- multiGSEA(gdb, vm, vm$design, 'tumor', methods=NULL)
lfc <- logFC(mg)

lianos/multiGSEA documentation built on Nov. 17, 2020, 1:26 p.m.