getHousekeepingGeneSetDb: Retrieves a housekeeping GeneSetDb for a given species

In lianos/multiGSEA: A unified interface to a plethora of gene set enrichment analysis methods

Description

The genesets provided here were extracted from the genes used in the Qiagen RT2 Profiler PCR Arrays.

Usage

getHousekeepingGeneSetDb(
  species = c("human", "mouse"),
  id.type = c("entrez", "ensembl"),
  ...
)

Arguments

species	"human" or "mouse"
id.type	defines the type of identifers used in the feature_id column for the GeneSetDb, "entrez" or "ensembl".

Details

Sources for the mouse and human genesets can be found here:

• mouse: https://www.qiagen.com/us/shop/pcr/primer-sets/rt2-profiler-pcr-arrays/?catno=PAMM-000Z#geneglobe

• human: https://www.qiagen.com/us/shop/pcr/primer-sets/rt2-profiler-pcr-arrays/?catno=PAHS-000Z#geneglobe

Value

a GeneSetDb of housekeeping genes

lianos/multiGSEA documentation built on Nov. 17, 2020, 1:26 p.m.