getReactomeGeneSetDb: Retrieve annotations from reactome.db
In lianos/multiGSEA: A unified interface to a plethora of gene set enrichment analysis methods
Description
Usage
Arguments
Value
Description
Retrieve annotations from reactome.db
Usage
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getReactomeGeneSetDb(
species = "human",
id.type = c("entrez", "ensembl"),
rm.species.prefix = TRUE
)
Arguments
species
the species to get pathay information for
id.type
"entrez" or "ensembl"
rm.species.prefix
pathways are provided with species prefixes from
reactome.db, when TRUE (default), these are stripped from the gene set
names.
Value
a reactome GeneSetDb object
lianos/multiGSEA documentation built on Nov. 17, 2020, 1:26 p.m.
R Package Documentation
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Description Usage Arguments Value
Description
Retrieve annotations from reactome.db
Usage
1 2 3 4 5 | getReactomeGeneSetDb(
species = "human",
id.type = c("entrez", "ensembl"),
rm.species.prefix = TRUE
)
|
Arguments
species |
the species to get pathay information for |
id.type |
|
rm.species.prefix |
pathways are provided with species prefixes from
|
Value
a reactome GeneSetDb object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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