MEE.data-class: MEE.data An S4 class contains 5 slots: methylation,...
In lijingya/ELMER:
Inferring Regulatory Element Landscapes and Transcription Factor
Networks Using Cancer Methylomes
Description
Slots
Author(s)
See Also
Description
MEE.data
An S4 class contains 5 slots: methylation, expression, sample information, probe
information and gene information. MEE.data class are the main input for main functions.
Slots
methA matrix of DNA methylation. Each row is one probe and each
column is one sample
expA matrix of expression. Each row is one gene and each
column is one sample
sampleA data.frame contains sample information
probeInfoA GRange object contains probe information
geneInfoA GRange object contains gene information
Author(s)
Lijing Yao (maintainer: lijingya@usc.edu)
See Also
get.diff.meth, get.pair, get.TFs, get.permu,
getMeth,getExp, getGeneInfo, getProbeInfo,
getSample,fetch.mee,scatter.plot
lijingya/ELMER documentation built on May 21, 2019, 6:14 a.m.
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Description Slots Author(s) See Also
Description
MEE.data An S4 class contains 5 slots: methylation, expression, sample information, probe information and gene information. MEE.data class are the main input for main functions.
Slots
methA matrix of DNA methylation. Each row is one probe and each column is one sample
expA matrix of expression. Each row is one gene and each column is one sample
sampleA data.frame contains sample information
probeInfoA GRange object contains probe information
geneInfoA GRange object contains gene information
Author(s)
Lijing Yao (maintainer: lijingya@usc.edu)
See Also
get.diff.meth, get.pair, get.TFs, get.permu,
getMeth,getExp, getGeneInfo, getProbeInfo,
getSample,fetch.mee,scatter.plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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