get450K: get450K to download HM40K DNA methylation data for certain...
In lijingya/ELMER:
Inferring Regulatory Element Landscapes and Transcription Factor
Networks Using Cancer Methylomes
Description
Usage
Arguments
Value
Author(s)
References
Description
get450K is a function to download latest version of HM450K DNA methylation for
all samples of certain cancer types from TCGA website.
Usage
1
get450K(disease, basedir = "./Data")
Arguments
disease
A character specifies the disease to download from TCGA such as BLCA
basedir
A path shows where the data will be stored.
Value
Download all DNA methylation from HM450K level 3 data for the
specified disease.
Author(s)
Lijing Yao (maintainer: lijingya@usc.edu)
References
https://tcga-data.nci.nih.gov/tcga/tcgaHome2.jsp
lijingya/ELMER documentation built on May 21, 2019, 6:14 a.m.
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Description Usage Arguments Value Author(s) References
Description
get450K is a function to download latest version of HM450K DNA methylation for all samples of certain cancer types from TCGA website.
Usage
1 | get450K(disease, basedir = "./Data")
|
Arguments
disease |
A character specifies the disease to download from TCGA such as BLCA |
basedir |
A path shows where the data will be stored. |
Value
Download all DNA methylation from HM450K level 3 data for the specified disease.
Author(s)
Lijing Yao (maintainer: lijingya@usc.edu)
References
https://tcga-data.nci.nih.gov/tcga/tcgaHome2.jsp
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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