Files in lileir/mms2plot
Visualization of multiple MS/MS spectra for modified and non-modified peptides
.Rbuildignore
.gitignore
DESCRIPTION
MMS2plot user guide.docx
NAMESPACE
NEWS
R/MQ_prep.R
R/MQ_prep_subfunc.R
R/MZID_prep.R
R/add_mod_aa.R
R/mms2plot.R
R/plot_components.R
R/plot_mirror_or_group.R
R/psm_calculation.R
README.md
Supplementary Data 1.zip
data/aa_mw_table.rda
data/atom_mw_table.rda
inst/extdata/AA_MW.txt
inst/extdata/Dimethyl_Labelling/QEplus008065.mzML
inst/extdata/Dimethyl_Labelling/mqpar.xml
inst/extdata/Dimethyl_Labelling/msms_dim.txt
inst/extdata/Dimethyl_Labelling/msms_dim_test.txt
inst/extdata/TMT/a03851.mzML
inst/extdata/TMT/mqpar.xml
inst/extdata/TMT/msms_TMT.txt
inst/extdata/TMT/msms_TMT_test.txt
inst/extdata/atom_MW.txt
inst/extdata/kal/j13478.mzML
inst/extdata/kal/modifications.xml
inst/extdata/kal/mqpar_K_ala.xml
inst/extdata/kal/mqpar_batch_test.txt
inst/extdata/kal/msms_CRTAC1.txt
inst/extdata/kal/msms_CRTAC1_test.txt
inst/extdata/label_free/j6577.mzML
inst/extdata/label_free/mqpar.xml
inst/extdata/label_free/msms_labelfree.txt
inst/extdata/label_free/msms_labelfree_test.txt
inst/extdata/label_free_ETD/3to1_rpt_ETD_inclusion_band8.mgf
inst/extdata/label_free_ETD/3to1_rpt_ETD_inclusion_band8.mzML
inst/extdata/label_free_ETD/mqpar.xml
inst/extdata/label_free_ETD/msms_lf_ETD.txt
inst/extdata/label_free_ETD/msms_lf_ETD_test.txt
inst/extdata/modifications.xml
inst/extdata/par_batch.txt
inst/extdata/par_batch_test.txt
inst/extdata/phospho/HeLa_EGF5_pH11.mgf
inst/extdata/phospho/HeLa_EGF5_pH11.mzML
inst/extdata/phospho/mqpar.xml
inst/extdata/phospho/msms_phospho.txt
inst/extdata/phospho/msms_phospho_test.txt
inst/extdata/prep/MSGFplus/j6577.mzid
inst/extdata/prep/MSfragger/j6577.mzid
inst/extdata/prep/MSfragger/j6577.pepXML
inst/extdata/prep/MaxQuant/conversion/identification.txt
inst/extdata/prep/MaxQuant/msms.txt
inst/extdata/prep/comet/conversion/identification.txt
inst/extdata/prep/comet/j6577.mzid
inst/extdata/prep/comet/j6577.pep.xml
inst/extdata/prep/j6577.mzML
inst/extdata/prep/user_table_forMSMS.txt
inst/extdata/prep/user_table_forMZID.txt
inst/extdata/silac/20110715_EXQ1_TaGe_SA_PC42_1.mzML
inst/extdata/silac/mqpar.xml
inst/extdata/silac/msms_SILAC.txt
inst/extdata/silac/msms_SILAC_test.txt
inst/extdata/test/mms2plot_1230_test.rar
inst/extdata/test/modifications.xml
inst/extdata/test/mqpar11.xml
inst/extdata/test/q5145.mzML
inst/extdata/test/q5145_1229.txt
inst/extdata/test/q5145_1229_test.txt
man/MQ_prep.Rd
man/MZID_prep.Rd
man/aa_mw_table.Rd
man/atom_mw_table.Rd
man/mms2plot.Rd
mms2plot.Rproj
tests/testthat.R
tests/testthat/input_table.rds
tests/testthat/list_aaMwModTable_ppm.rds
tests/testthat/modifications.xml
tests/testthat/mqpar_filepath.rds
tests/testthat/mqpar_files.rds
tests/testthat/mqpar_ppm.rds
tests/testthat/par_xml_path.rds
tests/testthat/test-check_input_table.R
vignettes/annotation.png
vignettes/mms2plot.R
vignettes/mms2plot.Rmd
vignettes/mms2plot.html
