lima1/PureCN: Copy number calling and SNV classification using targeted short read sequencing
Version 1.9.2

This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, and has support for tumor samples without matching normal samples.

Getting started

Package details

Bioconductor views CopyNumberVariation Coverage Sequencing Software VariantAnnotation VariantDetection
Maintainer
LicenseArtistic-2.0
Version1.9.2
URL https://github.com/lima1/PureCN
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("lima1/PureCN")
lima1/PureCN documentation built on Nov. 9, 2017, 4:14 p.m.