lima1/PureCN: Copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, and has support for tumor samples without matching normal samples.
Getting started
Browse package contents
Package details |
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| Bioconductor views | CopyNumberVariation Coverage ImmunoOncology Sequencing Software VariantAnnotation VariantDetection |
| Maintainer | |
| License | Artistic-2.0 |
| Version | 2.9.6 |
| URL | https://github.com/lima1/PureCN |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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