centromeres: A list of data.frames containing centromere positions.
In lima1/PureCN: Copy number calling and SNV classification using targeted short read sequencing
centromeres R Documentation
A list of data.frames containing centromere positions.
Description
A list of data.frames containing centromere positions for hg18, hg19 and hg38.
Downloaded from the UCSC genome browser.
Usage
data(centromeres)
Value
A list with three data frames, "hg18", "hg19", and "hg38". Each containes
three columns
chroma factor with levels chr1 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 chr19 chr2 chr20 chr21 chr22 chr3 chr4 chr5 chr6 chr7 chr8 chr9 chrX chrY
chromStarta numeric vector
chromEnda numeric vector
References
The script downloadCentromeres.R in the extdata directory was used to generate
the data.frames.
Examples
data(centromeres)
lima1/PureCN documentation built on Nov. 22, 2024, 6:07 a.m.
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| centromeres | R Documentation |
A list of data.frames containing centromere positions.
Description
A list of data.frames containing centromere positions for hg18, hg19 and hg38. Downloaded from the UCSC genome browser.
Usage
data(centromeres)Value
A list with three data frames, "hg18", "hg19", and "hg38". Each containes three columns
chroma factor with levels
chr1chr10chr11chr12chr13chr14chr15chr16chr17chr18chr19chr2chr20chr21chr22chr3chr4chr5chr6chr7chr8chr9chrXchrYchromStarta numeric vector
chromEnda numeric vector
References
The script downloadCentromeres.R in the extdata directory was used to generate the data.frames.
Examples
data(centromeres)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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