disp_norm: Normalization factors, library size and dispersion
In linbingqing/stableDE: Stability of methods for differential expression analysis of RNA-Seq data

Calculate normalization factors, library size and dispersion by edgeR_robust

1	disp_norm(counts, group)

`counts`	a matrix of raw read counts
`group`	factor that giving the experimental condition for each sample

tag_disp genewise dispersion arameter estimate for each gene for the negative binomial model

norm.factors normalization factors by TMM for each replicate

lib.size library size for each replicate

 bottomly <- RNAseq_data(sel_size = 3)
 counts <- bottomly$counts_evaluation
 group <- bottomly$group_evaluation
 dn <- disp_norm(counts, group)

linbingqing/stableDE documentation built on May 29, 2019, 3:06 a.m.

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