edgeR.pfun: edgeR
In linbingqing/stableDE: Stability of methods for differential expression analysis of RNA-Seq data
Description
Usage
Arguments
Value
Examples
Description
Implement edgeR with standard pipeline (Robinson et al., 2010) with small
modification from
"http://imlspenticton.uzh.ch/robinson_lab/edgeR_robust/".
Usage
1
edgeR.pfun(counts, group, prior.df = 10)
Arguments
counts
a matrix of raw read counts
group
factor that giving the experimental condition for each sample
Value
pval vector of p-values
padj vector of adjusted p-values by Benjamini-Hochberg procedure
Examples
1
2
bottomly <- RNAseq_data(sel_size = 3)
res <- edgeR.pfun(bottomly$counts_evaluation, bottomly$group_evaluation)
linbingqing/stableDE documentation built on May 29, 2019, 3:06 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Implement edgeR with standard pipeline (Robinson et al., 2010) with small modification from "http://imlspenticton.uzh.ch/robinson_lab/edgeR_robust/".
Usage
1 | edgeR.pfun(counts, group, prior.df = 10)
|
Arguments
counts |
a matrix of raw read counts |
group |
factor that giving the experimental condition for each sample |
Value
pval vector of p-values
padj vector of adjusted p-values by Benjamini-Hochberg procedure
Examples
1 2 | bottomly <- RNAseq_data(sel_size = 3)
res <- edgeR.pfun(bottomly$counts_evaluation, bottomly$group_evaluation)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.