Files in lindsaypino/MSstats-patch
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
.BBSoptions
DESCRIPTION
NAMESPACE
NEWS
R/DataProcess.R
R/DataProcessPlots.R
R/GroupComparison.R
R/GroupComparisonPlots.R
R/MaxQtoMSstatsFormat.R
R/PDtoMSstatsFormat.R
R/ProgenesistoMSstatsFormat.R
R/Quantification.R
R/SampleSizeCalculation.R
R/SkylinetoMSstatsFormat.R
R/SpectronauttoMSstatsFormat.R
R/TransformMSnSet.R
R/linear_quantlim.R
R/lodq_util.R
R/methods.R
R/modelBasedQCPlots.R
R/nonlinear_quantlim.R
R/plot_quantlim.R
README.md
data/DDARawData.RData
data/DDARawData.Skyline.RData
data/DIARawData.RData
data/SRMRawData.RData
data/SpikeInDataLinear.RData
data/SpikeInDataNonLinear.RData
dev/2017-08-01/NULL
dev/2017-08-01/VVEVAPAK_NONLINEAR_overall.svg
dev/2017-08-01/VVEVAPAK_NONLINEAR_zoom.svg
dev/20170202_figuresofmerit_batch.R
dev/TEST_df.csv
dev/UPS_water_curve_encyclopedia.elib.peptides.MELTED.csv
dev/calibration_data_norm.csv
dev/test_df2.csv
dev/testset_lodloq.csv
inst/CITATION
inst/doc/MSstats-manual.pdf
inst/doc/MSstats.R
inst/doc/MSstats.Rmd
inst/doc/MSstats.html
man/DDARawData.Rd
man/DDARawData.Skyline.Rd
man/DIARawData.Rd
man/MSstats-package.Rd
man/MaxQtoMSstatsFormat.Rd
man/PDtoMSstatsFormat.Rd
man/ProgenesistoMSstatsFormat.Rd
man/SRMRawData.Rd
man/SkylinetoMSstatsFormat.Rd
man/SpectronauttoMSstatsFormat.Rd
man/SpikeInDataLinear.Rd
man/SpikeInDataNonLinear.Rd
man/dataProcess.Rd
man/dataProcessPlots.Rd
man/designSampleSize.Rd
man/designSampleSizePlots.Rd
man/groupComparison.Rd
man/groupComparisonPlots.Rd
man/linear_quantlim.Rd
man/modelBasedQCPlots.Rd
man/nonlinear_quantlim.Rd
man/plot_quantlim.Rd
man/quantification.Rd
man/transformMSnSetToMSstats.Rd
man/transformMSstatsToMSnSet.Rd
