dataBrowser: Browse the current data available in TFregulomeR

In linquynus/TFregulomeR-dev: TFregulomeR reveals transcription factors’ context-specific features and functions

Browse the current data available in TFregulomeR

Description

This function allows you to get the current data in TFregulomeR

Usage

dataBrowser(species, organ, sample_type, cell_tissue_name, tf,
  disease_state, source, server = "sg", TFregulome_url)

Arguments

species	The species of interset
organ	The organ of interset
sample_type	The sample type of interset
cell_tissue_name	The name of tissue or cell of interset
tf	The TF of interset
disease_state	The disease state of interset
source	The source of interset
server	server localtion to be linked, either 'sg' or 'ca'.
TFregulome_url	TFregulomeR server is implemented in MethMotif server. If the MethMotif url is NO more "http://bioinfo-csi.nus.edu.sg/methmotif/" or "http://methmotif.org", please use a new url.

Value

data.frame containing the information of the queried TFBSs in TFregulomeR

Examples

TFBS_brain <- dataBrowser(organ = "brain")

linquynus/TFregulomeR-dev documentation built on April 23, 2022, 11:11 a.m.