plotLogo: plot (Meth)Motif logo

In linquynus/TFregulomeR-dev: TFregulomeR reveals transcription factors’ context-specific features and functions

plot (Meth)Motif logo

Description

This function allows you to plot (Meth)Motif logo.

Usage

plotLogo(MM_object, logo_type = "entropy", meth_level = "all")

Arguments

MM_object	Required. MethMotif class object
logo_type	Logo type for the (Meth)Motif logo to be saved, either "entropy" (default) or "frequency".
meth_level	Methylation level to be plot for the (Meth)Motif logo, and it should be one of the values, "all" (default), "methylated", and "unmethylated".

Value

(Meth)Motif logo pdf file. If the TFregulomeR peak source is from MethMotif, MethMotif logo will be saved; if the source is GTRD, only motif logo will be saved.

Examples

K562_CEBPB <- searchMotif(id = "MM1_HSA_K562_CEBPB")
plotLogo(MM_object = K562_CEBPB)

linquynus/TFregulomeR-dev documentation built on April 23, 2022, 11:11 a.m.