P.G.extract: Protein Groups information extract.

In liukf10/TEST: Disease-Drived Differential Proteins and Proteome-Wide Co-Expression Network Associated Analysis

Description

uniprot ID, ENTRYNAME and status information extract.(only fit for MaxQuant data.)

Usage

P.G.extract(inf, ncol = 4, justID = FALSE,
            status1 = FALSE, ENTRY1 = FALSE, verbose = 0)

Arguments

inf	protein groups IDs information.
ncol	column numbers of output result.
justID	a logical value indicated whether only extract uniprot ID.
status1	a logical value indicated whether extract the first ID status.
ENTRY1	a logical value indicated whether extract the first ID ENTRY NAME.
verbose	integer level of verbosity. Zero means silent, 1 means have Diagnostic Messages.

Author(s)

Kefu Liu

Examples

rm(list = ls())
library(DDPNA)
data(ProteomicData)
MaxQdata <- MaxQprotein(ProteomicData$MaxQ)
inf <- P.G.extract(MaxQdata$protein_IDs, justID = TRUE, status = TRUE, ENTRY = TRUE)

liukf10/TEST documentation built on May 20, 2019, 12:59 a.m.