moduleID: extract intersection ID between dataset and module

In liukf10/TEST: Disease-Drived Differential Proteins and Proteome-Wide Co-Expression Network Associated Analysis

Description

extract intersection ID between dataset and one of module

Usage

moduleID(inf, module, num, coln = "new.ID")

Arguments

inf	dataset protein ID information. a vector of protein IDs.
module	module information which is getted in Module_inf function.
num	module number which will extract to compared with dataset ID information.
coln	column names of module protein IDs.

Details

column coln information in module when module number is num intersect with inf.

Author(s)

Kefu Liu

Examples

rm(list = ls())
library(DDPNA)
data(net)
data(imputedData)
data <- imputedData
logD <- data$log2_value
rownames(logD) <- data$inf$ori.ID
group <- gsub("[0-9]+","", colnames(logD))
Module <- Module_inf(net, data$inf)
up <- changedID(logD, group, vs.set2 = "ad",vs.set1 = "ctl",
              rank = "foldchange",anova = FALSE, Padj = "none",cutoff = 1,
              datatype = "log2",fctype = "up")
intersection <- moduleID(up, Module, 5, coln = "ori.ID")

liukf10/TEST documentation built on May 20, 2019, 12:59 a.m.