Description Usage Arguments Details Author(s) Examples
extract intersection ID between dataset and one of module
1 |
inf |
dataset protein ID information. a vector of protein IDs. |
module |
module information which is getted in |
num |
module number which will extract to compared with dataset ID information. |
coln |
column names of module protein IDs. |
column coln
information in module
when module number is num
intersect with inf.
Kefu Liu
1 2 3 4 5 6 7 8 9 10 11 12 13 | rm(list = ls())
library(DDPNA)
data(net)
data(imputedData)
data <- imputedData
logD <- data$log2_value
rownames(logD) <- data$inf$ori.ID
group <- gsub("[0-9]+","", colnames(logD))
Module <- Module_inf(net, data$inf)
up <- changedID(logD, group, vs.set2 = "ad",vs.set1 = "ctl",
rank = "foldchange",anova = FALSE, Padj = "none",cutoff = 1,
datatype = "log2",fctype = "up")
intersection <- moduleID(up, Module, 5, coln = "ori.ID")
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