Reactome_DB_Update: Update/download new database - Reactome. New database will be...

In liulihe954/EnrichKit: Perform hypergeometric-based over-presentation analysis

Description

Update/download new database - Reactome. New database will be gathered and stored locally.

Usage

Reactome_DB_Update(
  websource = "https://reactome.org/download/current/NCBI2Reactome_All_Levels.txt",
  Species = "Bos taurus",
  keyword = "Reactome_DB",
  DB_location = "."
)

Arguments

websource	websource = "https://reactome.org/download/current/NCBI2Reactome_All_Levels.txt"
Species	Default Species = "Bos taurus"
keyword	Keyword used for naming. Default keyword = "Reactome_DB"
DB_location	Store path of the new database. Default is current working directory.

Value

NA. New dataset will be packed and stored in .RData format.

Examples

Reactome_DB_Update()

liulihe954/EnrichKit documentation built on Oct. 10, 2020, 11:49 p.m.