Interpro_DB_Update: Update/download new database - Interpro. New database will be...

In liulihe954/EnrichKit: Perform hypergeometric-based over-presentation analysis

Description

Update/download new database - Interpro. New database will be gathered and stored locally.

Usage

Interpro_DB_Update(
  biomart = "ensembl",
  dataset = "btaurus_gene_ensembl",
  attributes = c("ensembl_gene_id", "interpro", "interpro_description"),
  keyword = "Interpro_DB",
  DB_location = "."
)

Arguments

biomart	BioMart database name you want to connect to. Default biomart="ensembl"
dataset	Mart object created with the useMart function. Default dataset="btaurus_gene_ensembl"
attributes	Attributes you want to retrieve. Refer to listAttributes.
keyword	Keyword used for naming. Default keyword = "Interpro_DB"
DB_location	Store path of the new database. Default is current working directory.

Value

NA. New dataset will be packed and stored in .RData format.

Examples

Interpro_DB_Update()

liulihe954/EnrichKit documentation built on Oct. 10, 2020, 11:49 p.m.