SNP data functions

Description Usage Arguments Value Examples

Retrieve QTL data by gene.

1 2	getAnimalQTL(qtl_attributes, gene_filters, gene_values, data_set, snp = "", snp_attributes = "")

`qtl_attributes,`	Attributes you want to retrieve. A possible list of attributes can be retrieved using the function listQTLAF().
`gene_filters,`	Filters (one or more) that should be used in the query. A possible list of filters can be retrieved using the function listGeneAF().
`gene_values,`	Values of the filter, e.g. vector of IDs. If multiple filters are specified then the argument should be a list of vectors of which the position of each vector corresponds to the position of the filters in the filters argument.
`data_set,`	choose one of '1,2,3,4,5'.'1' = 'btaurus_gene_ensembl', '2' = 'ggalluse_gene_ensembl','3' = 'ecaballus_gene_ensembl', '4' = 'sscrofa_gene_ensembl','5' = 'oaries_gene_ensembl'.
`snp,`	Default 'FALSE'.Detemine whether retrieve SNP data by TRUE or FALSE.
`snp_attributes,`	SNP attributes you want to retrieve.A possible list of attributes can be retrieved using the function listSNPAttributes().

result

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gene_filters <- c('ensembl_gene_id');
gene_values <- c('ENSBTAG00000009851');
getAnimalQTL(qtl_attributes=c('QTL_ID'), gene_filters, gene_values, data_set=1, snp=TRUE, 'refsnp_id');