SNP data functions

Description Usage Arguments Value Examples

Retrieve gene data by QTL data.

1	getSNPbyQTL(snp_attributes, qtl_filters, qtl_values, data_set)

`snp_attributes,`	Attributes you want to retrieve. A possible list of snp_attributes can be retrieved using the function listAttributes biomaRt.
`qtl_filters,`	qtl_filters (one or more) that should be used in the query. A possible list of filters can be retrieved using the function listFilters.
`qtl_values,`	Values of the qtl_filters, e.g. vector of IDs. If multiple qtl_filters are specified then the argument should be a list of vectors of which the position of each vector corresponds to the position of the qtl_filters in the qtl_filters argument.
`data_set,`	choose one of '1,2,3,4,5'.'1' = 'btaurus_gene_ensembl', '2' = 'ggalluse_gene_ensembl', '3' = 'ecaballus_gene_ensembl','4' = 'sscrofa_gene_ensembl', '5' = 'oaries_gene_ensembl'.

result

snp_attributes <- c('refsnp_id');
qtl_filters <- c('QTL_ID');
qtl_values <- c('64577', '2199', '2354');
getSNPbyQTL(snp_attributes, qtl_filters, qtl_values, data_set = 2);