getQTLbySNP: Retrieve QTL data by SNP.

In liuyufong/AnimalGene2QTL: Get the QTL/gene/SNP data functions

Description

Retrieve QTL data by SNP.

Usage

getQTLbySNP(qtl_attributes, snp_filters, snp_values, data_set)

Arguments

qtl_attributes,	Attributes you want to retrieve. A possible list of attributes can be retrieved using the function listQTLAF().
snp_filters,	Filters (one or more) that should be used in the query. A possible list of filters can be retrieved using the function listSNPFilters().
snp_values,	Values of the filter, e.g. vector of IDs. If multiple filters are specified then the argument should be a list of vectors of which the position of each vector corresponds to the position of the filters in the filters argument.
data_set,	choose one of '1,2,3,4,5'.'1' = 'btaurus_snp', '2' = 'ggallus_snp','3' = 'ecaballus_snp', '4' = 'sscrofa_snp','5' = 'oaries_snp'.

Value

result

Examples

snp_filters <- c('snp_filter');
snp_values <- c('rs3136845');
getQTLbySNP(qtl_attributes=c('QTL_ID'), snp_filters, snp_values, data_set=2);

liuyufong/AnimalGene2QTL documentation built on May 9, 2019, 12:48 p.m.