README.md

In liuyujie0136/tinyfuncr: tiny R functions

tinyfuncr

A collection of tiny R functions for handy use.

Installation

devtools::install_github("liuyujie0136/tinyfuncr")

Functions

• bm2md: Convert html format bookmarks to markdown
• spirograph: Draw Spirograph
• mergeDups: Merge duplicated lines into one entry
• expandDups: Expand one entry into multiple lines
• RWrapper: Wrapper for reading and writing files
• read_tcsv: Read table/csv files into a data frame
• write_tcsv: Write table/csv files from a data frame
• geom_signif_wrapper: Wrapper for significance layer in ggsignif
• ggbetweenstats_wrapper: Wrapper for (grouped_)ggbetweenstats in ggstatsplot
• ggchrom: Annotate chromosome using ggplot2
• calcDensity: Calculate density in a given region
• calcDensityGFF: Calculate gene density on chromosome
• ggfanplot: Add "fanplot" to chromosome
• ggideogram: Plot ideogram and annotations on chromosome
• extractPos: Extract all elements from GFF3 file
• genometracks: Plot genome tracks for NGS data
• ggepitracks: Plot epigenetic data tracks using ggplot2

Dependencies

• In tidyverse: ggplot2, dplyr, stringr, tidyr, purrr
• Data: magrittr, reshape2, data.table
• ggplot2 extensions: ggstatsplot, ggrepel, ggsignif, ggtree, patchwork, cowplot, scales, ggh4x
• Color: RColorBrewer, paletteer
• Bioinfo: GenomicRanges, rtracklayer
• Others: gmp, rlang, ipmisc, parallel

Bugs

If you find bugs, please open an issue.

liuyujie0136/tinyfuncr documentation built on Dec. 13, 2024, 8:49 a.m.