calcDensityGFF: Calculate gene density on chromosome
In liuyujie0136/tinyfuncr: tiny R functions
View source: R/calcDensityGFF.R
calcDensityGFF R Documentation
Calculate gene density on chromosome
Description
Calculate density of genes, CDS, mRNAs, tRNAs, etc on chromosome from a given GFF file with a slide window
Usage
calcDensityGFF(gff_file, karyotype_info, feature = "gene", window = 1e+05)
Arguments
gff_file
GFF file
karyotype_info
tab-separated file (or a data frame) containing karyotype information, with first column being "Chr", second being "Start", third being "End". File should NOT have header.
feature
interested feature to calculate, should be in GFF file
window
length of each slide window, defaut 100kb
Author(s)
Yujie Liu
liuyujie0136/tinyfuncr documentation built on Dec. 13, 2024, 8:49 a.m.
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View source: R/calcDensityGFF.R
| calcDensityGFF | R Documentation |
Calculate gene density on chromosome
Description
Calculate density of genes, CDS, mRNAs, tRNAs, etc on chromosome from a given GFF file with a slide window
Usage
calcDensityGFF(gff_file, karyotype_info, feature = "gene", window = 1e+05)
Arguments
gff_file |
GFF file |
karyotype_info |
tab-separated file (or a data frame) containing karyotype information, with first column being "Chr", second being "Start", third being "End". File should NOT have header. |
feature |
interested feature to calculate, should be in GFF file |
window |
length of each slide window, defaut 100kb |
Author(s)
Yujie Liu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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