createCNVMatrix: Create CNV Distance Matrix
In lizamathews/CAISC: Clonal Architecture with Integration of SNV and CNV

This function creates a cell-cell distance matrix using CNV data.

createCNVMatrix(
  rawCountsMatrix,
  annotations,
  geneOrder,
  ref_sample,
  outputFile
)

`rawCountsMatrix`	Name of raw counts matrix file
`annotations`	Name of annotations file
`geneOrder`	Name of gene order file
`outputFile`	Name of output file that inferCNV object is saved to

lizamathews/CAISC documentation built on Dec. 21, 2021, 11:41 a.m.

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