createComplexHeatmap: Create SNV Distance Matrix input from VCF File
In lizamathews/CAISC: Clonal Architecture with Integration of SNV and CNV

Description Usage Arguments Value

View source: R/complex_heatmap.R

This function finds chromosome information, alternative allele read counts (X), total read counts (N), and mutation profile matrix (Z) from VCF file of mutations

createComplexHeatmap(
  snvDistMatrix,
  cnvDistMatrix,
  integratedDistMatrix,
  infercnvObj,
  geneOrder
)

`snvDistMatrix`	cell-cell distance matrix generated with SNV data
`cnvDistMatrix`	cell-cell distance matrix generated with CNV data
`integratedDistMatrix`	integrated distance matrix with CNV and SNV data
`infercnvObj`	RDA File with inferCNV object
`geneOrder`	Name of geneOrder file, file with gene annotations