createSNVMatrix: Create Distance Matrix of SNVs

In lizamathews/CAISC: Clonal Architecture with Integration of SNV and CNV

Description

This function creates a distance matrix of SNVs using alternative allele read counts, total allele read counts, and a mutation profile matrix

Usage

createSNVMatrix(filevcf, mutations, SRR_ID, output_csv)

Arguments

filevcf	Path to input VCF file
mutations	Path to input mutations RDA file
SRR_ID	Path to file with SRR IDs
output_csv	Name of output csv file with distance matrix

Value

SNV Distance Matrix

lizamathews/CAISC documentation built on Dec. 21, 2021, 11:41 a.m.