networkStructures: Generate list of network structures for testing with...

In lkshrsch/gLVInterNetworks: Inference of interaction networks based on generalised Lotka Volterra dynamics

Description

In order to compare explicit network structures based on prior knowledge of the system or to test for different solutions, this function generates either a complete list containing all possible network topologies for n species, or generates a list based on a pre-specified list of network structures to test.

Usage

networkStructures <- function(n, upperBound = 10, lowerBound = -10, testStructures = c("+--+--","++----"))

Arguments

n	Optional. Generate a list containing all possible network structures in a system containing n species
upperBound	The upper numeric constraint for the parameter values. Default is 10
lowerBound	The lower numeric constraint for the parameter values. Default is -10
testStructures	Optional. A list containing strings with specific network structures the user wishes to compare. The structures should contain only "+" or "-" characters representing the qualitative values for the parameter matrix.

Value

Returns lists describing the network structures to test, and upper and lower values which will be given as input for the nonlinear regression.

lkshrsch/gLVInterNetworks documentation built on May 21, 2019, 7:33 a.m.