Description Usage Arguments Value
In order to compare explicit network structures based on prior knowledge of the system or to test for different solutions, this function generates either a complete list containing all possible network topologies for n species, or generates a list based on a pre-specified list of network structures to test.
1 | networkStructures <- function(n, upperBound = 10, lowerBound = -10, testStructures = c("+--+--","++----"))
|
n |
Optional. Generate a list containing all possible network structures in a system containing n species |
upperBound |
The upper numeric constraint for the parameter values. Default is 10 |
lowerBound |
The lower numeric constraint for the parameter values. Default is -10 |
testStructures |
Optional. A list containing strings with specific network structures the user wishes to compare. The structures should contain only "+" or "-" characters representing the qualitative values for the parameter matrix. |
Returns lists describing the network structures to test, and upper and lower values which will be given as input for the nonlinear regression.
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