Man pages for llrs/STATegRa
Classes and methods for multi-omics data integration
| bioDist | bioDist |
| bioDistclass | bioDistclass |
| bioDistFeature | bioDistFeature |
| bioDistFeaturePlot | bioDistFeaturePlot |
| bioDistW | bioDistW |
| bioDistWPlot | bioDistWPlot |
| bioMap | bioMap |
| biplotRes | Biplot of component analysis |
| caClass-class | caClass |
| combiningMappings | combiningMappings, combining several mappings for use in the... |
| createOmicsExpressionSet | createOmicsExpressionSet |
| getInitialData | Retrieve initial data from caClass objects |
| getLoadings | Retrieve component analysis loadings |
| getMethodInfo | Retrieve information about component analysis method |
| getPreprocessing | Retrieve information about preprocessing |
| getScores | Retrieve component analysis scores |
| getVAF | Retrieve information abotut VAF |
| holistOmics | HolistOmics an application of NPC on omics datasets |
| modelSelection | Find optimal common and distinctive components |
| omicsCompAnalysis | Components analysis for multiple objects |
| omicsNPC | omicsNPC, applying the Non-Parametric Combination (NPC) on... |
| PCA.selection | Select an optimal number of components using PCA |
| plotRes | Plot component analysis results |
| plotVAF | Plot VAF (Variance Explained For) from Component Analysis |
| selectCommonComps | Select common components in two data blocks |
| STATegRa | STATegRa |
| STATegRa_data | STATegRa data |
| STATegRa_data_TCGA_BRCA | STATegRa data |
| STATegRa-defunct | Defunct functions in STATegRa |
| STATegRaUsersGuide | STATegRaUsersGuide |
