getInitialData: Retrieve initial data from caClass objects

In llrs/STATegRa: Classes and methods for multi-omics data integration

Description

Generic function to retrieve the initial data used for by omicsCompAnalysis from a caClass-class object

Usage

getInitialData(x, block=NULL)

Arguments

x	caClass-class object.
block	Character indicating the block of data to be returned. It can be specified by the position of the block ("1" or "2") or the name assigned in the caClass-class object. If it is NULL both blocks are displayed.

Value

The requested data block or blocks

Author(s)

Patricia Sebastian-Leon

See Also

omicsCompAnalysis, caClass-class

Examples

data("STATegRa_S3")
B1 <- createOmicsExpressionSet(Data=Block1.PCA, pData=ed.PCA,
                               pDataDescr=c("classname"))
B2 <- createOmicsExpressionSet(Data=Block2.PCA,
                               pData=ed.PCA, pDataDescr=c("classname"))
# Omics components analysis
res <- omicsCompAnalysis(Input=list(B1, B2), Names=c("expr", "mirna"),
                         method="DISCOSCA", Rcommon=2, Rspecific=c(2, 2),
                         center=TRUE, scale=TRUE, weight=TRUE)
getInitialData(res)
getInitialData(res, block="expr")

llrs/STATegRa documentation built on May 29, 2019, 3:42 a.m.