createOmicsExpressionSet: createOmicsExpressionSet
In llrs/STATegRa: Classes and methods for multi-omics data integration

Description Usage Arguments Details Value Author(s) Examples

This function allow to the user to create a ExpressionSet object from a matrix representing an omics dataset. It allows to include the experimental design and annotation in the ExpressionSet object.

1 2	createOmicsExpressionSet(Data, pData = NULL, pDataDescr = NULL, feaData = NULL, feaDataDescr = NULL)

`Data`	Omics data
`pData`	Data associated with the samples/phenotype
`pDataDescr`	Description of the phenotypic data
`feaData`	Data associated with the variables/features annotation
`feaDataDescr`	Description of the feature annotation

In Data matrix, samples has to be in columns and variables has to be in rows

ExpressionSet with the data provided

Patricia Sebastian-Leon

data(STATegRa_S3)
B1 <- createOmicsExpressionSet(Data=Block1.PCA,pData=ed.PCA,
                               pDataDescr=c("classname"))
B2 <- createOmicsExpressionSet(Data=Block2.PCA,pData=ed.PCA,
                               pDataDescr=c("classname"))