Man pages for lpwgit/sampleContamination
Sample Contamination R Package

filterByCovFilter mutations base on coverage
filterCommonSNPsFilter mutations base on coefficient of variant
filterMultiSourcesFilter multisource contamination
inputDataRead in data from a file
is_scalar_characterCheck for scalar argument
mixingRatioCalculate contamination level
multipleSourceIdentify true source from multisource contamination
numMutationperSampleCount number of SNPs in each sample
pairCountPointCount number of SNPs in 7 regions of a given pair of sample
pairPCommonPairwise Sample Function
pairRelationDetermine relationship between pairwise sample
regionCountMutationCount number of mutation in 7 regions of VAF scatter plot for...
run_sampleContaminationMain function to run sample contamination analysis
setParameterConfigSet parameters base on configuration file
lpwgit/sampleContamination documentation built on Feb. 14, 2018, 9:43 p.m.