filterByCov | Filter mutations base on coverage |
filterCommonSNPs | Filter mutations base on coefficient of variant |
filterMultiSources | Filter multisource contamination |
inputData | Read in data from a file |
is_scalar_character | Check for scalar argument |
mixingRatio | Calculate contamination level |
multipleSource | Identify true source from multisource contamination |
numMutationperSample | Count number of SNPs in each sample |
pairCountPoint | Count number of SNPs in 7 regions of a given pair of sample |
pairPCommon | Pairwise Sample Function |
pairRelation | Determine relationship between pairwise sample |
regionCountMutation | Count number of mutation in 7 regions of VAF scatter plot for... |
run_sampleContamination | Main function to run sample contamination analysis |
setParameterConfig | Set parameters base on configuration file |
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