filterCommonSNPs: Filter mutations base on coefficient of variant
In lpwgit/sampleContamination: Sample Contamination R Package
Description
Usage
Arguments
Value
References
View source: R/filterCommonSNPs.R
Description
This function filters common SNPs base on cutoff on coefficient of variant (COV)
Usage
1
filterCommonSNPs(VAFdata, percentage, output_path)
Arguments
VAFdata
data frame, mutation VAF
percentage
numeric, COV cutoff in percentage (default: 5)
output_path
character, tmp directory to store log file (SNPcv.txt)
Value
integer vector, row index of VAF data to be used
References
TBA
lpwgit/sampleContamination documentation built on May 21, 2019, 7:51 a.m.
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Description Usage Arguments Value References
View source: R/filterCommonSNPs.R
Description
This function filters common SNPs base on cutoff on coefficient of variant (COV)
Usage
1 | filterCommonSNPs(VAFdata, percentage, output_path)
|
Arguments
VAFdata |
data frame, mutation VAF |
percentage |
numeric, COV cutoff in percentage (default: 5) |
output_path |
character, tmp directory to store log file (SNPcv.txt) |
Value
integer vector, row index of VAF data to be used
References
TBA
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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