pairCountPoint: Count number of SNPs in 7 regions of a given pair of sample
In lpwgit/sampleContamination: Sample Contamination R Package
Description
Usage
Arguments
Value
References
View source: R/pairCountPoint.R
Description
This function counts number of SNPs in 7 regions of a given pair of sample
Usage
1
pairCountPoint(VAFdata,pid1,pid2,slope1,slope2)
Arguments
VAFdata
data frame, mutation VAF
pid1
character, first sample id
pid2
character, second sample id
slope1
numeric, first slope that is closer to axis-X (default: 0.5)
slope2
numeric, second slope that is closer to axis-Y (default: 2)
Value
matrix, containing number of SNPs in 7 regions
References
TBA
lpwgit/sampleContamination documentation built on May 21, 2019, 7:51 a.m.
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Description Usage Arguments Value References
View source: R/pairCountPoint.R
Description
This function counts number of SNPs in 7 regions of a given pair of sample
Usage
1 | pairCountPoint(VAFdata,pid1,pid2,slope1,slope2)
|
Arguments
VAFdata |
data frame, mutation VAF |
pid1 |
character, first sample id |
pid2 |
character, second sample id |
slope1 |
numeric, first slope that is closer to axis-X (default: 0.5) |
slope2 |
numeric, second slope that is closer to axis-Y (default: 2) |
Value
matrix, containing number of SNPs in 7 regions
References
TBA
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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