Man pages for lshtm-vimc/prime
PRIME -- Papillomavirus Rapid Interface for Modelling and Economics
| ageCoverage | Get age-specific coverage-rates |
| analyseCosts | Returns cost-effectiveness for a single birthcohort in a... |
| BatchRun | Run multiple cohorts in a batch |
| checkSize | Checks whether the size of a variable is larger than 0 |
| CreatePsaData | Generate/read Latin hyper cube sample of parameters for... |
| data.cecx_1y_prevalence | 1-year prevalence of cervical cancer |
| data.cecx_1y_prevalence2020 | 1-year prevalence of cervical cancer |
| data.cecx_3y_prevalence | 3-year prevalence of cervical cancer |
| data.cecx_3y_prevalence2020 | 3-year prevalence of cervical cancer |
| data.cecx_5y_prevalence | 5-year prevalence of cervical cancer |
| data.cecx_5y_prevalence2020 | 5-year prevalence of cervical cancer |
| data.costcecx | Cost of cervical cancer treatment |
| data.countryname | Country names and codes |
| data.cross_protection | Cross-protection effect of bivalent and quadrivalent vaccines |
| data.disability_weights | Disability weights and duration of cervical cancer stages |
| data.global | Global data table |
| data.hpv_distribution | Relative contribution of HPV 16/18/31/33/45/52/58 in ICC... |
| data.incidence | Incidence of cervical cancer, by age and country |
| data.incidence2020 | Incidence of cervical cancer, by age and country |
| data.incidence_ui | Incidence of cervical cancer with uncertainty intervals, all... |
| data.mortall | WHO life table |
| data.mortall.unwpp.nqx | UNWPP life table |
| data.mortcecx | Mortality from cervical cancer, by age and country |
| data.mortcecx2020 | Mortality from cervical cancer, by age and country |
| data.mortcecx_ui | Mortality from cervical cancer with uncertainty intervals,... |
| data.pop | UNWPP population estimates |
| data.popproj | Population projections of 5-year old girls |
| data.quality | Data quality of incidence and mortality |
| data.sexual_debut | Sexual debut data |
| data.valid | Model validation |
| dtAggregate | Collapse data-tables |
| dtColMatch | Match two data-tables on multiple columns |
| EmulateVaccineImpactVimcStochastic | Emulate vaccine impact estimates (VIMC stochastic runs) |
| EmulateVaccineImpactVimcStochastic_all_cecx_burden | Emulate vaccine impact estimates (VIMC stochastic runs) - all... |
| Estimate_all_cecx_burden_central | Generate vaccine impact estimates - HPV all types (VIMC... |
| EstimateVaccineImpactVimcCentral | Generate vaccine impact estimates - HPV 16/18 types (VIMC... |
| Generate_diagnostic_plots | Generate diagnostic plots of vaccine coverage and burden... |
| getISO3 | Retrieve ISO3-code of country |
| lifeTable | Construct lifetable based on qx-column |
| monetary_to_number | Convert monetary character-strings to numeric values |
| old_CreatePsaData | Generate/read Latin hyper cube sample of parameters for... |
| old_EmulateVaccineImpactVimcStochastic_all_cecx_burden | Emulate vaccine impact estimates (VIMC stochastic runs) - all... |
| OutputVimc | Formatting output for VIMC Montagu |
| OutputVimc_old | Formatting output for VIMC Montagu |
| prime | prime: Papillomavirus Rapid Interface for Modelling and... |
| propSexDebut | Proportion of girls sexually debuted |
| RegisterBatchData | Creates .data.batch for running multiple birth cohorts |
| RegisterBatchDataVimc | Creates .data.batch for running multiple birth cohorts (VIMC... |
| RunCohort | Run PRIME for a single birth-cohort |
| RunCountry | Run PRIME for a specific country |
| writelog | Simulation log reporting |
