EmulateVaccineImpactVimcStochastic | R Documentation |
Emulate vaccine impact estimates for VIMC stochastic runs/sensitivity analysis. The inputs are central disease burden estimates, input parameter distributions (latin hyper sampling), runs for sensitivity analysis, and filename for stochastic burden estimates. The outputs are stochastic disease burden estimates (full results file plus a file per country).
EmulateVaccineImpactVimcStochastic(
disease_burden_template_file,
centralBurdenResultsFile,
psaData,
diseaseBurdenStochasticFolder,
diseaseBurdenStochasticFile,
psa_runs,
countryCodes = -1,
vaccination_scenario
)
disease_burden_template_file |
csv file (required), central disease burden template (vimc format); add column with run_id to get stochastic disease burden template |
centralBurdenResultsFile |
csv file (required), central disease burden estimates pre and post vaccination |
psaData |
data table (required), latin hyper cube sample of input parameters |
diseaseBurdenStochasticFolder |
character string (required), stochastic disease burden estimates folder (output) |
diseaseBurdenStochasticFile |
character string (required), stochastic disease burden estimates file(s) (output) |
psa_runs |
integer (required), simulation runs for sensitivity analysis |
countryCodes |
list (optional), If country codes are provided, stochastic burden estimates are generated for these countries. If set to -1, then stochastic burden estimates are generated for the countries included in the central burden estimates. |
vaccination_scenario |
logical (required), generate stochastic burden estimates for (vaccination) or (no vaccination) scenario |
Stochastic disease burden estimates are generated. (i) full results files 1 full results file for pre-vaccination (optional) 1 full results file for post-vaccination (ii) 1 file per country for all runs 1 file per country for all runs – pre-vaccination (optional) 1 file per country for all runs – post-vaccination
Null return value; disease burden estimates are saved to corresponding files
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.