CreatePsaData: Generate/read Latin hyper cube sample of parameters for...

In lshtm-vimc/prime: PRIME -- Papillomavirus Rapid Interface for Modelling and Economics

Generate/read Latin hyper cube sample of parameters for sensitivity analysis

Description

Generate Latin hyper cube sample of input parameters based on their distributions for probabilistic sensitivity analysis. If file (sample of parameters) already exists, then read Latin hyper cube sample of input parameters.

Usage

CreatePsaData(
  country_codes,
  vaccine = "4vHPV",
  psa_runs = 0,
  seed_state = 1,
  psadat_file = "psadat.csv",
  psadat_vimc_file = "psadat_vimc.csv",
  run_lhs = FALSE
)

Arguments

country_codes	ISO3 country codes of countries
vaccine	bivalent/quadrivalent or nonavalent HPV vaccine
psa_runs	integer, simulation runs for sensitivity analysis
seed_state	integer, seed value for random number generator
psadat_file	character string, file to save Latin hyper cube sample of input parameters
psadat_vimc_file	character string, file to save Latin hyper cube sample of input parameters (VIMC format)
run_lhs	logical, if TRUE create new sample of input parameters, if FALSE, read sample of input parameters from file

Value

Null return value; disease burden estimates are saved to corresponding files

Examples

  CreatePsaData (
    country_codes    = c("AFG", "ALB"),
    vaccine          = "4vHPV",
    psa_runs         = 200,
    seed_state       = 1,
    psadat_file      = "psadat.csv",
    psadat_vimc_file = "psadat_vimc.csv",
    run_lhs          = TRUE)

lshtm-vimc/prime documentation built on April 21, 2024, 3:21 a.m.