Estimate_all_cecx_burden_central: Generate vaccine impact estimates - HPV all types (VIMC...

In lshtm-vimc/prime: PRIME -- Papillomavirus Rapid Interface for Modelling and Economics

Generate vaccine impact estimates - HPV all types (VIMC central run)

Description

Generate vaccine impact estimates (HPV all types) for VIMC central runs. The inputs are cecx burden estimates pre- and post-vaccination with 4vHPV / 9vHPV at different ages. The outputs are cecx burden estimates pre- and post-vaccination with HPV all types at different ages.

Usage

Estimate_all_cecx_burden_central(
  cecx_burden_file,
  cecx_burden_file_all,
  vaccine,
  disease_burden_template_file = "",
  disease_burden_no_vaccination_file_all = "",
  disease_burden_vaccination_file_all = "",
  vimc_output = TRUE
)

Arguments

cecx_burden_file	csv file (input), disease burden estimates (cecx burden attributable to HPV 16/18)
cecx_burden_file_all	csv file (output), disease burden estimates (cecx burden attributable to HPV all types)
vaccine	character, bivalent/quadrivalent/nonovalent HPV vaccine
disease_burden_template_file	csv file (input), disease burden template (vimc format)
disease_burden_no_vaccination_file_all	csv file (output), disease burden estimates for no vaccination (cecx burden attributable to HPV all types - vimc format)
disease_burden_vaccination_file_all	csv file (output), disease burden estimates for vaccination (cecx burden attributable to HPV all types - vimc format)

Details

Three disease burden estimates (HPV all types) are generated. (i) disease burden estimates for no vaccination (vimc format) (ii) disease burden estimates for vaccination (vimc format) (iii) disease burden estimates for vaccination (pre- and post-vaccination) and includes YLDs and YLLs

Value

Null return value; disease burden estimates are saved to corresponding files

Examples

    Estimate_all_cecx_burden_central (
      cecx_burden_file                       = "central_burden_results_file.csv",
      cecx_burden_file_all                   = "central_burden_results_file_all.csv",
      vaccine                                = "4vHPV",
      disease_burden_template_file           = "central_burden_template_file.csv",
      disease_burden_no_vaccination_file_all = "central_burden_no_vaccination_file_all_vimc_format.csv",
      disease_burden_vaccination_file_all    = "central_burden_vaccination_file_all_vimc_format.csv",
      vimc_output                            = TRUE)

lshtm-vimc/prime documentation built on April 21, 2024, 3:21 a.m.