desp_loop: Apply despiking to all data blocks
In lsigut/openeddy: Post-process eddy covariance data with ease

desp_loop

R Documentation

Apply despiking to all data blocks

Description

This is a low level function not intended to be used on its own. It is utilized by despikeLF that should be used instead.

Usage

desp_loop(SD_sub, date, nVals, z, c, plot = FALSE)

Arguments

`SD_sub`	A data frame prepared by `despikeLF` with expected columns Index, Date, timestamp, var, Spike and Light. This is a subset of data (`x`) provided to `despikeLF` containing only the data of good quality.
`date`	An unsubsetted vector of class `"Date"` extracted from data frame `x` fed to `despikeLF`.
`nVals`	A numeric value. Number of values within 13-day blocks required to obtain robust statistics.
`z`	A numeric value. `MAD` scale factor.
`c`	A numeric value. `mad` scale factor. Default is `3 * mad constant` (`i.e. 3 * 1.4826 = 4.4478`).
`plot`	A logical value. If `TRUE`, list of `ggplot` objects visualizing the spikes is also produced.

Value

If plot = FALSE, an updated data frame SD_sub with identified spikes in column Spike and with three new columns var_minus, var_plus and diff. If plot = TRUE, a list with elements SD (a data frame identical to the one produced if plot = FALSE) and plots containing a list of ggplot objects.