cal_met_snp: 'cal_met_snp'

In ludwigHoon/minSNPs: Resolution-Optimised SNPs Searcher

cal_met_snp

Description

cal_met_snp is used to calculate the metric at each position

Usage

cal_met_snp(position, metric, seqc, prepend_position = c(), ...)

Arguments

position	position to check
metric	either 'simpson' or 'percent'
seqc	list of sequences, either passed directly from process_allele or read_fasta or equivalence
prepend_position	is the position to be added to the
...	other parameters as needed

Value

return the value at that position, as well as base pattern for next iteration.

ludwigHoon/minSNPs documentation built on March 25, 2024, 11:54 a.m.