merge_fasta: 'merge_fasta'

In ludwigHoon/minSNPs: Resolution-Optimised SNPs Searcher

merge_fasta

Description

merge_fasta is used to combine 2 fasta.

Usage

merge_fasta(
  fasta_1,
  fasta_2,
  meta_1,
  meta_2,
  ref,
  method = "full",
  bp = BiocParallel::SerialParam(),
  ...
)

Arguments

fasta_1	fasta read into memory to join
fasta_2	fasta read into memory to join
meta_1	meta file for 'fasta_1' denoting all positions of SNPs and position in reference genome
meta_2	meta file for 'fasta_2' denoting all positions of SNPs and position in reference genome
ref	name of the reference genome (needs to be in both fasta files)
method	how to join the 2 fasta, currently supported methods are: inner, full
bp	the BiocParallel backend
...	all other arguments

Value

Will return a list containing a merged FASTA and a meta.

ludwigHoon/minSNPs documentation built on March 25, 2024, 11:54 a.m.