combine_search_string_result: 'combine_search_string_result'

In ludwigHoon/minSNPs: Resolution-Optimised SNPs Searcher

combine_search_string_result

Description

combine_search_string_result combines the search results from search_from_fastq_reads

Usage

combine_search_string_result(
  results,
  search_table,
  append_to_current_result = data.frame(),
  bp = MulticoreParam()
)

Arguments

results	the dataframes to collapse.
search_table	a dataframe with the following columns: - "id","type","sequence","strand","result","extra","match_ref_seq"
append_to_current_result	the dataframe of previous result to append to
bp	BiocParallel backend to use for parallelization

Value

will return a dataframe containing: - 'sequence', 'search_id', 'reads', 'raw_match', 'mean_qualities', 'indexes', 'id', 'type', 'strand', 'result', 'extra', 'match_ref_seq', 'n_reads'

ludwigHoon/minSNPs documentation built on March 25, 2024, 11:54 a.m.