Files in lujunyan1118/DrugScreenExplorer_dev
A pipeline for processing drug sensitivity screen data
DESCRIPTION
DrugScreenExplorer.Rproj
LICENSE
Meta/vignette.rds
NAMESPACE
NEWS
R/.DS_Store
R/.Rhistory
R/correctEdgeEffect.R
R/createPlateInput.R
R/createWellInput.R
R/dataset.R
R/estimateEdgeEffect.R
R/fitEdgeEffect.R
R/fitIC50.R
R/helper.R
R/makeReport.R
R/makeShiny.R
R/normalizePlate.R
R/plotPlate.R
R/plotRawCount.R
R/plotTypeDist.R
R/predictIC50.R
R/readScreen.R
R/sumIC50.R
R/summariseScreen.R
README.md
data/screenData.RData
data/screenData_normalized.RData
doc/vignette.R
doc/vignette.Rmd
doc/vignette.html
inst/.DS_Store
inst/.Rhistory
inst/app.R
inst/template.Rmd
inst/testData/.DS_Store
inst/testData/plateAnno/.DS_Store
inst/testData/plateAnno/plateAnno.tsv
inst/testData/rawData/.DS_Store
inst/testData/rawData/batch1/CTGLuminescence_P0007_12PB0265.txt
inst/testData/rawData/batch1/CTGLuminescence_P0007_14PB0491.txt
inst/testData/rawData/batch1/CTGLuminescence_P0010_11PB0010.txt
inst/testData/rawData/batch1/CTGLuminescence_P0010_13PB0658.txt
inst/testData/rawData/batch1/CTGLuminescence_P0010_15PB0023.txt
inst/testData/rawData/batch1/CTGLuminescence_P0010_16PB0066.txt
inst/testData/rawData/batch2/CTGLuminescence_P0014_15PB0031.txt
inst/testData/rawData/batch2/CTGLuminescence_P0019_11PB0021.txt
inst/testData/rawData/batch2/CTGLuminescence_P0019_14PB0344.txt
inst/testData/rawData/batch2/CTGLuminescence_P0021_11PB0023.txt
inst/testData/rawData/batch2/CTGLuminescence_P0021_13PB0035.txt
inst/testData/rawData/batch2/CTGLuminescence_P0021_15PB0016.txt
inst/testData/rawData/batch2/CTGLuminescence_P0024_11PB0026.txt
inst/testData/rawData/batch2/CTGLuminescence_P0024_14PB0550.txt
inst/testData/rawData/batch2/CTGLuminescence_P0027_11PB0032.txt
inst/testData/rawData/batch2/CTGLuminescence_P0027_15PB0026.txt
inst/testData/wellAnno/.DS_Store
inst/testData/wellAnno/wellAnno.tsv
man/.DS_Store
man/correctEdgeEffect.Rd
man/createPlateInput.Rd
man/createWellInput.Rd
man/estimateEdgeEffect.Rd
man/fitEdgeEffect.Rd
man/fitIC50.Rd
man/makeReport.Rd
man/makeShiny.Rd
man/normalizePlate.Rd
man/plotPlate.Rd
man/plotRawCount.Rd
man/plotTypeDist.Rd
man/predict.fitIC50.Rd
man/readScreen.Rd
man/screenData.Rd
man/screenData_normalized.Rd
man/sumIC50.Rd
man/summariseScreen.Rd
tests/.DS_Store
tests/testthat.R
tests/testthat/.DS_Store
tests/testthat/.Rhistory
tests/testthat/prepare.R
tests/testthat/test-correctEdgeEffect.R
tests/testthat/test-fitEdgeEffect.R
tests/testthat/test-readPlate.R
tests/testthat/test-readScreen.R
tests/testthat/test-summariseScreen.R
tests/testthat/testData/.DS_Store
tests/testthat/testData/example_plates/expected_values.RData
tests/testthat/testData/example_plates/plate1.txt
tests/testthat/testData/example_plates/plate2.txt
tests/testthat/testData/expectedOutput/edgeCorrected.RData
tests/testthat/testData/expectedOutput/edgeFactor.RData
tests/testthat/testData/expectedOutput/expected_values.RData
tests/testthat/testData/expectedOutput/screenData.RData
tests/testthat/testData/expectedOutput/summarisedData.RData
tests/testthat/testData/plateAnno/.DS_Store
tests/testthat/testData/plateAnno/plateAnno.tsv
tests/testthat/testData/rawData/.DS_Store
tests/testthat/testData/rawData/batch1/.DS_Store
tests/testthat/testData/rawData/batch1/P0007_12PB0265.txt
tests/testthat/testData/rawData/batch1/P0010_11PB0010.txt
tests/testthat/testData/rawData/batch2/.DS_Store
tests/testthat/testData/rawData/batch2/P0019_11PB0021.txt
tests/testthat/testData/rawData/batch2/P0021_11PB0023.txt
tests/testthat/testData/wellAnno/.DS_Store
tests/testthat/testData/wellAnno/wellAnno.tsv
vignettes/.DS_Store
vignettes/.Rhistory
vignettes/.gitignore
vignettes/vignette.Rmd
