luslab/hiclipr: Analyses hiCLIP data
Version 0.3.1

This package analyses hiCLIP data. It starts with barcode processing and hybrid read selection followed by alignment. (These functions use Cutadapt, Bowtie2, Samtools and Sambamba.) Then PCR duplicates are removed and there are downstream analysis functions as in the original hiCLIP paper.

Getting started

Package details

Maintainer<[email protected]>
LicenseGPL-3
Version0.3.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("luslab/hiclipr")
luslab/hiclipr documentation built on May 21, 2017, 3:44 p.m.