luslab/hiclipr: Analyses hiCLIP data
This package analyses hiCLIP data. It starts with barcode processing and hybrid read selection followed by alignment. (These functions use Cutadapt, Bowtie2, Samtools and Sambamba.) Then PCR duplicates are removed and there are downstream analysis functions as in the original hiCLIP paper.
Getting started
Browse package contents
Package details |
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| Maintainer | <anob.chakrabarti@crick.ac.uk> |
| License | GPL-3 |
| Version | 0.3.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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