API for luslab/hiclipr
Analyses hiCLIP data
| Global functions | |
|---|---|
| AlignReadsBowtie | Man page Source code |
| AnnotateHybrid | Man page |
| AnnotateHybridArm | Man page |
| ConvertToDataTable | Man page |
| ConvertToGRanges | Man page |
| ConvertToGenomicCoordinates | Man page |
| CreateBED | Man page |
| CreateBowtieIndices | Man page Source code |
| CreateDirectories | Man page Source code |
| CreateNonRedundantHybrids | Man page |
| DemultiplexReads | Man page Source code |
| EvaluateBarcodes | Man page |
| ExportBED | Man page |
| ExtractHybrids | Man page Source code |
| ExtractRandomBarcodes | Man page Source code |
| FindDuplex | Man page |
| FindDuplexPositions | Man page |
| FindIslands | Man page |
| FindNonIslandHybrids | Man page |
| GetSequence | Man page Source code |
| LoadBAM | Man page Source code |
| PlotGenicRegion | Man page Source code |
| PlotHybridRegion | Man page Source code |
| PlotIntraInterRatio | Man page |
| PlotLoopLength | Man page |
| PlotRegionMate | Man page |
| RunRNAHybrid | Man page |
| SelectGenicHybrid | Man page |
