Man pages for lwaldron/LeviRmisc
Levi's miscellaneous handy R functions
| adjP | user-friendly wrapper to the multtest package to adjust for... |
| cladeFilter | Filter rows of a table of relative abundances |
| collapseProbesets | ## Wrapper for jetset or possibly other |
| ComBatWrapper | Wrapper for the ComBat.R function |
| cvPredictions | cvPredictions - get cross-validated predictions |
| expandProbesets | ## expand featureNames of an ExpressionSet that are 2+... |
| fold | fold - also known variously as reduce, accumulate, compress,... |
| geoLookup | ## Look up basic experiment and platform information from GEO... |
| geoPmidLookup | ## Look up metadata for any combination of GEO series and... |
| getFolds | split N samples into nfolds folds. |
| getGEO2 | ## Wrapper for GEOquery::getGEO |
| heatmap.3 | Enhanced heatmap based on gplots::heatmap.2 |
| LeviRmisc-package | Levi's miscellaneous handy R functions |
| makeCLS | function to create a valid cls file |
| makeTXT | function to create a valid cls file |
| multiHist | ## Plot one or more histograms on the same axes using lines |
| readGMT | Read a gmt (gene matrix transposed) file |
| readPCL | Read numeric plus metadata from a .pcl file |
| shortenCladeName | Shorten Maaslin-compliant or QIIME-compliant taxonomical... |
| writeGMT | Create a gmt (gene matrix transposed) file |
| writePCL | Write a PCL file |
