adjP | user-friendly wrapper to the multtest package to adjust for... |
cladeFilter | Filter rows of a table of relative abundances |
collapseProbesets | ## Wrapper for jetset or possibly other |
ComBatWrapper | Wrapper for the ComBat.R function |
cvPredictions | cvPredictions - get cross-validated predictions |
expandProbesets | ## expand featureNames of an ExpressionSet that are 2+... |
fold | fold - also known variously as reduce, accumulate, compress,... |
geoLookup | ## Look up basic experiment and platform information from GEO... |
geoPmidLookup | ## Look up metadata for any combination of GEO series and... |
getFolds | split N samples into nfolds folds. |
getGEO2 | ## Wrapper for GEOquery::getGEO |
heatmap.3 | Enhanced heatmap based on gplots::heatmap.2 |
LeviRmisc-package | Levi's miscellaneous handy R functions |
makeCLS | function to create a valid cls file |
makeTXT | function to create a valid cls file |
multiHist | ## Plot one or more histograms on the same axes using lines |
readGMT | Read a gmt (gene matrix transposed) file |
readPCL | Read numeric plus metadata from a .pcl file |
shortenCladeName | Shorten Maaslin-compliant or QIIME-compliant taxonomical... |
writeGMT | Create a gmt (gene matrix transposed) file |
writePCL | Write a PCL file |
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