collapseProbesets: ## Wrapper for jetset or possibly other
In lwaldron/LeviRmisc: Levi's miscellaneous handy R functions
Description
Usage
Arguments
Value
Author(s)
Description
methods for collapsing probesets to genes. Create a tab separated
file for the phenoData slot. Used for Level 1 Affymetrix data.
Note that the jetset package must be installed but currently
available only from http://www.cbs.dtu.dk/biotools/jetset/.
Function by Markus Riester.
Usage
1
collapseProbesets(eset, method = c("jetset"))
Arguments
eset
ExpressionSet with probe sets ids as features. Requires as valid
annotation slot for the mapping to gene symbols (rma/frma normalized
ExpressionSets have that slot).
method
The collapsing method. "jetset" is a wrapper for the Jetset package.
Value
ExpressionSet with probe sets mapped to gene symbols.
Author(s)
Levi Waldron and Markus Riester
lwaldron/LeviRmisc documentation built on May 21, 2019, 8:59 a.m.
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Description Usage Arguments Value Author(s)
Description
methods for collapsing probesets to genes. Create a tab separated file for the phenoData slot. Used for Level 1 Affymetrix data. Note that the jetset package must be installed but currently available only from http://www.cbs.dtu.dk/biotools/jetset/. Function by Markus Riester.
Usage
1 | collapseProbesets(eset, method = c("jetset"))
|
Arguments
eset |
ExpressionSet with probe sets ids as features. Requires as valid annotation slot for the mapping to gene symbols (rma/frma normalized ExpressionSets have that slot). |
method |
The collapsing method. "jetset" is a wrapper for the Jetset package. |
Value
ExpressionSet with probe sets mapped to gene symbols.
Author(s)
Levi Waldron and Markus Riester
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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