qqunif.plot: qqunif.plot

Description Usage Arguments Value

View source: R/qqplot.R

Description

Takes in a p-values

Usage

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qqunif.plot(pvalues, should.thin = T, thin.obs.places = 2,
  thin.exp.places = 2, xlab = expression(paste("Expected (", -log[10],
  " p-value)")), ylab = expression(paste("Observed (", -log[10],
  " p-value)")), draw.conf = TRUE, conf.points = 1000,
  conf.col = "lightgray", conf.alpha = 0.05, already.transformed = FALSE,
  pch = 20, aspect = "fill", prepanel = prepanel.qqunif,
  par.settings = list(superpose.symbol = list(pch = pch)))

Arguments

pvalues

p-values

should.thin

thining

thin.obs.places

thining observed

thin.exp.places

thining expected

xlab

x-axis label

ylab

y-axis label

draw.conf

draw the conf

conf.points

points

conf.col

columns

conf.alpha

alpha

already.transformed

transformation

pch

pch

aspect

aspect

prepanel

prepanel

par.settings

settings

Value

functiont to draw qqplot


m-raheel/RnShinyBeads documentation built on Dec. 13, 2017, 1:08 p.m.