qqunif.plot: qqunif.plot

In m-raheel/RnShinyBeads: Interface for RnBeads generated reports

Description

Takes in a p-values

Usage

qqunif.plot(pvalues, should.thin = T, thin.obs.places = 2,
  thin.exp.places = 2, xlab = expression(paste("Expected (", -log[10],
  " p-value)")), ylab = expression(paste("Observed (", -log[10],
  " p-value)")), draw.conf = TRUE, conf.points = 1000,
  conf.col = "lightgray", conf.alpha = 0.05, already.transformed = FALSE,
  pch = 20, aspect = "fill", prepanel = prepanel.qqunif,
  par.settings = list(superpose.symbol = list(pch = pch)))

Arguments

pvalues	p-values
should.thin	thining
thin.obs.places	thining observed
thin.exp.places	thining expected
xlab	x-axis label
ylab	y-axis label
draw.conf	draw the conf
conf.points	points
conf.col	columns
conf.alpha	alpha
already.transformed	transformation
pch	pch
aspect	aspect
prepanel	prepanel
par.settings	settings

Value

functiont to draw qqplot

m-raheel/RnShinyBeads documentation built on May 21, 2019, 9:17 a.m.