API for mPloenzke/learnMotifs
Learn Nucleotide Motifs via Convolutions
| Global functions | |
|---|---|
| EmptyBackground | Man page |
| IUPAC2Matrix | Man page |
| MYC_CTCF_IRF | Man page |
| PFMatrix | Man page |
| calcActivationDifference | Man page |
| calculate_offsets | Man page |
| combo_IGM_Motifs | Man page |
| combo_PWM_Motifs | Man page |
| combo_constraint | Man page |
| deNovo_IGM_Motifs | Man page |
| deNovo_PWM_Motifs | Man page |
| filter_regularizer | Man page |
| find_max_length | Man page |
| fixedMotif_constraint | Man page |
| format_activation_motifs | Man page |
| format_activations | Man page |
| format_filter_motifs | Man page |
| get_activations | Man page |
| info_constraint | Man page |
| layer_deNovo | Man page |
| layer_fixedMotif | Man page |
| layer_topN_max_pooling | Man page |
| make_epoch_dir | Man page |
| my_readHOCOMOCOMatrix | Man page |
| my_readJASPARMatrix | Man page |
| negative_constraint | Man page |
| nonnegative_constraint | Man page |
| one_hot | Man page |
| one_hot_generator | Man page |
| one_hot_vector | Man page |
| pfm_to_igm | Man page |
| pfm_to_pwm | Man page |
| plot_activation_difference | Man page |
| plot_filter_activations_byClass | Man page |
| plot_motifs | Man page |
| position_regularizer | Man page |
| processHOCOMOCOText | Man page |
| processJASPARText | Man page |
| pwm_constraint | Man page |
| restrict_to_IGM | Man page |
| restrict_to_PWM | Man page |
| setup_log_dir | Man page |
| topN_max_pooling | Man page |
| total_regularizer | Man page |
