restrict_to_PWM: Constrains weights to be valid position weight measures.
In mPloenzke/learnMotifs: Learn Nucleotide Motifs via Convolutions
Description
Usage
Arguments
Value
Author(s)
Description
Constrains filter weights to be valid PWMs by rescaling the weights.
Usage
1
2
restrict_to_PWM(wts, bg = c(0.25, 0.25, 0.25, 0.25),
pseudoprob = 0.001)
Arguments
wts
Convolutional filter weights.
bg
Vector of background nucleotide probabilities (A, C, G, T)
pseudoprob
Value to add to zero-valued position probability matrix entries prior to converting to PWM.
Value
Rescaled weights.
Author(s)
Matthew Ploenzke, ploenzke@g.harvard.edu
mPloenzke/learnMotifs documentation built on May 27, 2019, 11:55 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
Description
Constrains filter weights to be valid PWMs by rescaling the weights.
Usage
1 2 | restrict_to_PWM(wts, bg = c(0.25, 0.25, 0.25, 0.25),
pseudoprob = 0.001)
|
Arguments
wts |
Convolutional filter weights. |
bg |
Vector of background nucleotide probabilities (A, C, G, T) |
pseudoprob |
Value to add to zero-valued position probability matrix entries prior to converting to PWM. |
Value
Rescaled weights.
Author(s)
Matthew Ploenzke, ploenzke@g.harvard.edu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.